'''
Created on Dec 8, 2010

@author: oabalbin
'''
'''
java -Xmx2048m -jar GenomeAnalysisTK.jar \
   -T VariantEval -R human_b36_both.fasta \
    -l INFO \
    -B:eval,VCF example1.vcf \
    -B:comp,VCF example2.vcf \
    -D /humgen/gsa-scr1/GATK_Data/dbsnp_129_b36.rod \
    -E CountVariants
    -noStandard
    -BTI eval
    
'''